Resultado da pesquisa (5)
Termo utilizado na pesquisa RFLP
#1 - Genotyping of Malassezia pachydermatis disclosed genetic variation in isolates from dogs in Colombia
Abstract in English:
Malassezia pachydermatis is a lipophilic and lipid-dependent yeast mostly isolated from animals’ skin; hence, it is regarded as a zoophilic species causing otitis externa in dogs. Aspects associated with its epidemiology and pathogenicity is a matter of interest. This study aimed to conduct a molecular characterization of 43 isolates of M. pachydermatis obtained from dogs with otitis externa. For this purpose, the 5.8S internal transcribed spacer 2 (ITS2) and D1/D2 26S rRNA regions were amplified, sequenced and analyzed using restriction fragment length polymorphism (RFLP) with AluI, CfoI, and BstF5I endonucleases. Phylogenetic analyses revealed that these isolates grouped with the sequence types I, IV and V, previously proposed for M. pachydermatis. Interestingly, we found a new polymorphic RFLP pattern using BstF5I, these isolates were associated with the sequence types IV and V, nevertheless an association between polymorphic RFLP patterns, and fosfolipase activity or canine population data was not observed. These findings underline the genetic diversity of M. pachydermatis and provide new insights about the epidemiology of this species in the analyzed population.
Abstract in Portuguese:
Malassezia pachydermatis é uma levedura lipofílica e dependente de lipídios, principalmente da pele de animais. Sendo, por essa razão, considerada uma espécie zoofílica e causadora de otite externa em cães. Neste sentido, aspectos associados à sua epidemiologia e patogenicidade constituem um tema de interesse científico. O objetivo deste estudo foi realizar a caracterização molecular de 43 isolados de M. pachydermatis obtidos a partir de cães com otite externa. Para esta propósito, foram amplificadas, sequenciadas e analisadas com enzimas de restrição as regiões do gene 5.8S, do espaçador interno transcrito 2 (ITS2) e D1/D2 do 26S do rRNA pelo método RFLP, com as endonucleases AluI, CfOI e BstF5I. Análises filogenéticas revelaram que os isolados se agruparam com as sequências tipo I, IV e V de M. pachydermatis como já descrito anteriormente. De maneira interessante, se observou um novo RFLP polimórfico utilizando BstF5I. Os isolados que mostraram esse padrão foram associados com os padrões IV e V. No entanto, não foi observada associação entre padrões polimórficos de RFLP e atividade de fosfolipase ou dados da população canina. Estes resultados demonstram a diversidade genética de M. pachydermatis e fornecem novas perspectivas sobre a epidemiologia destas espécies na população analisada.
#2 - Identification of new flagellin-encoding fliC genes in Escherichia coli isolated from domestic animals using RFLP-PCR and sequencing methods, 33(4):417-422
Abstract in English:
ABSTRACT.- Moura C., Tiba M.R., Silva M.J. & Leite D.S. 2013. Identification of new flagellin-encoding fliC genes in Escherichia coli isolated from domestic animals using RFLP-PCR and sequencing methods. Pesquisa Veterinária Brasileira 33(4):417-422. Universidade Paulista, Av. Armando Giassetti 577, Vila Hortolândia, Trevo Itu/Itatiba, Jundiaí, SP 13214-525, Brazil. E-mail: cmoura.bio@gmail.com
Identification of Escherichia coli requires knowledge regarding the prevalent serotypes and virulence factors profiles allows the classification in pathogenic/non-pathogenic. However, some of these bacteria do not express flagellar antigen in vitro. In this case the PCR-restriction fragment length polymorphism (RFLP-PCR) and sequencing of the fliC may be suitable for the identification of antigens by replacing the traditional serology. We studied 17 samples of E. coli isolated from animals and presenting antigen H nontypeable (HNT). The H antigens were characterized by PCR-RFLP and sequencing of fliC gene. Three new flagellin genes were identified, for which specific antisera were obtained. The PCR-RFLP was shown to be faster than the serotyping H antigen in E. coli, provided information on some characteristics of these antigens and indicated the presence of new genes fliC.
Abstract in Portuguese:
RESUMO.- Moura C., Tiba M.R., Silva M.J. & Leite D.S. 2013. Identification of new flagellin-encoding fliC genes in Escherichia coli isolated from domestic animals using RFLP-PCR and sequencing methods. [Identificação de novas flagelinas codificadas por fliC em Escherichia coli isoladas de animais domésticos utilizando RFLP-PCR e sequenciamento.] Pesquisa Veterinária Brasileira 33(4):417-422. Universidade Paulista, Av. Armando Giassetti 577, Vila Hortolândia, Trevo Itu/Itatiba, Jundiaí, SP 13214-525, Brazil. E-mail: cmoura.bio@gmail.com
A identificação da Escherichia coli requer conhecimento sobre os sorotipos e fatores de virulência prevalentes permitindo a classificação em patogênico/não patogênico. No entanto, algumas destas bactérias não expressam o antígeno flagelar in vitro. Neste caso, o PCR-restriction fragment length polymorphism (RFLP-PCR) e o sequenciamento do gene fliC podem ser adequados para a identificação desses antígenos, substituindo a sorologia tradicional. Nesta pesquisa foram estudadas 17 amostras de E. coli isoladas de animais e que apresentavam antígeno H não tipável (HNT). Os antígenos H foram caracterizados por PCR-RFLP e sequenciamento do gene fliC. Três novos genes da flagelina foram identificados, para os quais anti-soros específicos foram obtidos. A técnica PCR-RFLP mostrou-se mais rápida que a sorotipagem do antígeno H em E. coli, fornecendo informações sobre algumas características desses antígenos e indicou a presença de novos genes fliC.
#3 - Comparação genotípica de isolados de Corynebacterium pseudotuberculosis de caprinos e ovinos do sertão de Pernambuco, p.481-487
Abstract in English:
ABSTRACT.- Abreu S.R.O., Mota R.A., Rosinha G.M.S., Forner O., Pinheiro Júnior J.W., Pereira R.R.B., Castro R.S., Elisei C., Soares C.S., Araújo F.R. & Madureira R.C. 2008. [Genotypic comparison between Corynebacterium pseudotuberculosis samples obtained from sheep and goats with caseous lymphadenitis, raised in the semi-arid region of Pernambuco.] Comparação genotípica de isolados de Corynebacterium pseudotuberculosis de caprinos e ovinos do sertão de Pernambuco. Pesquisa Veterinária Brasileira 28(10):481-487. Clínica Escola de Medicina Veterinária, Faculdade de Ciências Biológicas e da Saúde, Centro de Ensino Superior de Maceió, Rodovia Divaldo Suruagy s/n, Quadra 4, Lote 4, Praia do Francês, Marechal Deodoro, AL 57160-000, Brazil. E-mail: silviobiotec@yahoo.com.br
The objective was to genotypically compare 35 samples of Corynebacterium pseudotuberculosis obtained from abscesses of sheep and goats diagnosed with caseous lymphadenitis originated from 5 different municipalities in the semi-arid region of Pernambuco, Brazil. The RFLP-PCR technique with Hpy-Ch4 and Msp I and Pst I Msp I restriction enzimes was used to fingerprint the genes rpoB and pld, respectively. The results demonstrate that there was no difference on the fragments banding pattern among samples, independently of the host species or geographic area studied, defining a homogeneous profile of C. pseudotuberculosis responsible for superficial abscesses for the region.
Abstract in Portuguese:
ABSTRACT.- Abreu S.R.O., Mota R.A., Rosinha G.M.S., Forner O., Pinheiro Júnior J.W., Pereira R.R.B., Castro R.S., Elisei C., Soares C.S., Araújo F.R. & Madureira R.C. 2008. [Genotypic comparison between Corynebacterium pseudotuberculosis samples obtained from sheep and goats with caseous lymphadenitis, raised in the semi-arid region of Pernambuco.] Comparação genotípica de isolados de Corynebacterium pseudotuberculosis de caprinos e ovinos do sertão de Pernambuco. Pesquisa Veterinária Brasileira 28(10):481-487. Clínica Escola de Medicina Veterinária, Faculdade de Ciências Biológicas e da Saúde, Centro de Ensino Superior de Maceió, Rodovia Divaldo Suruagy s/n, Quadra 4, Lote 4, Praia do Francês, Marechal Deodoro, AL 57160-000, Brazil. E-mail: silviobiotec@yahoo.com.br
The objective was to genotypically compare 35 samples of Corynebacterium pseudotuberculosis obtained from abscesses of sheep and goats diagnosed with caseous lymphadenitis originated from 5 different municipalities in the semi-arid region of Pernambuco, Brazil. The RFLP-PCR technique with Hpy-Ch4 and Msp I and Pst I Msp I restriction enzimes was used to fingerprint the genes rpoB and pld, respectively. The results demonstrate that there was no difference on the fragments banding pattern among samples, independently of the host species or geographic area studied, defining a homogeneous profile of C. pseudotuberculosis responsible for superficial abscesses for the region.
#4 - Genetic grouping of avian infectious bronchitis virus isolated in Brazil, based on RT-PCR/RFLP analysis of the S1 gene, p.190-194
Abstract in English:
ABSTRACT.- Montassier M.F.S., Brentano L., Montassier H.J. & Richtzenhain L.J. 2008. Genetic grouping of avian infectious bronchitis virus isolated in Brazil, based on RT-PCR/RFLP analysis of the S1 gene. Pesquisa Veterinária Brasileira 28(3):190-194. Faculdade de Medicina Veterinária e Zootecnia, Universidade de São Paulo, Av. Prof. Dr. Orlando de Paiva 87, São Paulo, SP 05508-000, Brazil. E-mail: leonardo@usp.br
Twelve Brazilian isolates and one reference vaccine strain of avian infectious bronchitis virus (IBV) were propagated in embryonating chicken eggs. The entire S1 glycoprotein gene of these viruses was analysed by reverse-transcriptase-polymerase chain reaction and restriction fragment length polymorphism (RT-PCR-RFLP), using the restriction enzymes HaeIII, XcmI and BstyI. The RFLP patterns led to the classification of these isolates into five distinct genotypes: A, B, C, D and Massachusetts. Five of twelve isolates were grouped in Massachusetts genotype and the remaining seven viruses were classified into four distinct genotypes: A (2), B (2), C (2) or D (1). Such genotyping classification agreed with previous immunological analysis for most of these viruses, highlighting the occurrence of a relevant variability among the IBV strains that are circulating in Brazilian commercial poultry flocks.
Abstract in Portuguese:
ABSTRACT.- Montassier M.F.S., Brentano L., Montassier H.J. & Richtzenhain L.J. 2008. Genetic grouping of avian infectious bronchitis virus isolated in Brazil, based on RT-PCR/RFLP analysis of the S1 gene. Pesquisa Veterinária Brasileira 28(3):190-194. Faculdade de Medicina Veterinária e Zootecnia, Universidade de São Paulo, Av. Prof. Dr. Orlando de Paiva 87, São Paulo, SP 05508-000, Brazil. E-mail: leonardo@usp.br
Twelve Brazilian isolates and one reference vaccine strain of avian infectious bronchitis virus (IBV) were propagated in embryonating chicken eggs. The entire S1 glycoprotein gene of these viruses was analysed by reverse-transcriptase-polymerase chain reaction and restriction fragment length polymorphism (RT-PCR-RFLP), using the restriction enzymes HaeIII, XcmI and BstyI. The RFLP patterns led to the classification of these isolates into five distinct genotypes: A, B, C, D and Massachusetts. Five of twelve isolates were grouped in Massachusetts genotype and the remaining seven viruses were classified into four distinct genotypes: A (2), B (2), C (2) or D (1). Such genotyping classification agreed with previous immunological analysis for most of these viruses, highlighting the occurrence of a relevant variability among the IBV strains that are circulating in Brazilian commercial poultry flocks.
#5 - Molecular characterization of part of the gag gene of caprine arthritis-encephalitis virus isolated from naturally infected goats from Rio Grande do Sul, Brazil, 18(3/4):119-126
Abstract in English:
ABSTRACT.- Marchesin D.M., Moojen V. & Ravazzolo A.P. 1998. [Molecular characterization of part of the gag gene of caprine arthritis-encephalitis virus isolated from naturally infected goats from Rio Grande do Sul, Brazil.] Caracterização molecular parcial do gene gag de amostras do vírus da artrite-encefalite caprina (CAEV) isoladas de animais naturalmente infectados no Rio Grande do Sul, Brasil. Pesquisa Veterinária Brasileira 18(3/4):119-126. Centro de Biotecnologia, Universidade Federal do Rio Grande do Sul, Av. Bento Gonçalves 9500, Cx. Postal 15005, Porto Alegre, RS 91501-970, Brazil.
The gag gene of 5 CAEV samples, isolated from naturally infected goats from Rio Grande do Sul, Brazil, were analised by PCR and restriction endonuclease (Ddel, Haelll e Ndel) digestion. Fragments of about 600 bp were amplified by PCR and submitted to enzymatic digestion. The patterns observed were compared with the correspondinggag sequences from 6 small ruminant lentiviruses. The results obtained allowed the separation of 3 distinct groups. The restriction fragment profiles observed were different from those previously described.
Abstract in Portuguese:
RESUMO.- Marchesin D.M., Moojen V. & Ravazzolo A.P. 1998. [Molecular characterization of part of the gag gene of caprine arthritis-encephalitis virus isolated from naturally infected goats from Rio Grande do Sul, Brazil.] Caracterização molecular parcial do gene gag de amostras do vírus da artrite-encefalite caprina (CAEV) isoladas de animais naturalmente infectados no Rio Grande do Sul, Brasil. Pesquisa Veterinária Brasileira 18(3/4):119-126. Centro de Biotecnologia, Universidade Federal do Rio Grande do Sul, Av. Bento Gonçalves 9500, Cx. Postal 15005, Porto Alegre, RS 91501-970, Brazil.
Realizou-se a análise de parte do gene gag, que codifica para as proteínas do capsídeo viral, de 5 amostras de CAEV isolados de animais naturalmente infectados do Rio Grande do Sul, Brasil. As amostras foram analisadas por PCR e clivagem com enzimas de restrição (Ddel, Haelll e Ndel). Fragmentos de aproximadamente 600 pb foram amplificados na PCR e submetidos à digestão enzimática. Os perfis obtidos foram comparados com as seqüências gag de 6 lentivírus de pequenos ruminantes. Os resultados obtidos permitiram separar as amostras em 3 grupos distintos. Os fragmentos observados foram diferentes dos descritos previamente.
